SOLUTION PORTAL

Discover Bioinformatics Solutions

Welcome to our Solutions Portal, where we provide a comprehensive suite of bioinformatics research services and consultations, covering sequence analysis, structural insights, and functional exploration.

Genomics & Sequence Analysis

Comprehensive Genomics Solutions.
From Data to Discovery.

We provide end-to-end bioinformatics services across NGS, single-cell and spatial omics, metagenomics, epigenomics, genome assembly, multi-omics, evolutionary genomics and clinical applications—transforming complex biological data into meaningful research insights.

Our Comprehensive Genomics Pipeline Select the area that aligns with your research goals.
01

Module 01: NGS Data Analysis & Interpretation

Understand genomic variation, function, and biological mechanisms.

What We Analyse

  • Bulk/NGS
  • RNA-Seq
  • WGS/WES
  • scRNA-Seq
  • scATAC-Seq
  • CRISPR-Seq
  • ATAC-Seq
  • ChIP-Seq
  • Spatial Transcriptomics
  • Metagenomics
  • Long-Read Sequencing

Key Analysis Areas

  • Quality Control & Preprocessing
  • Read Alignment & Quantification
  • Variant Analysis & Annotation
  • Differential Expression Analysis
  • Functional Annotation
  • Pathway & Enrichment Analysis

Tools & Platforms Used

  • FastQC
  • MultiQC
  • Trimmomatic / Cutadapt
  • BWA / Bowtie2
  • HISAT2 / STAR / Salmon
  • GATK / bcftools
  • DESeq2 / edgeR / limma
  • ANNOVAR / SnpEff
  • ClusterProfiler / GSEA
  • R / Python / Bioconductor

Deliverables

  • Processed Data
  • Statistical Results
  • Visualizations
  • Biological Interpretation
  • Analysis Reports

Ready to accelerate your research?

Let our bioinformatics experts turn your data into high-impact discoveries.

Request a Consultation & Quote →
Structural Bioinformatics

Structural Bioinformatics Solutions.
From Structure to Solutions.

Comprehensive computational solutions to model, analyze, and interpret molecular structures, predict interactions, simulate dynamics, and engineer proteins—driving insights for discovery.

Our Structural Bioinformatics Pipeline Select the stage that aligns with your research goals.
01

Module 01: Computer-Aided Drug Discovery (CADD)

Integrated computational strategies to discover, optimize, and prioritize drug candidates across the discovery pipeline.

What We Analyse

  • Target validation & assessment
  • Disease biology & target relevance
  • Pathway & mechanism analysis
  • Druggability assessment
  • Binding site identification
  • Structure availability assessment
  • Assay & data landscape review
  • Hit-to-lead strategy planning

Key Analysis Areas

  • Target prioritization
  • Binding site characterization
  • Ligandability & hot-spot mapping
  • Scaffold analysis
  • Chemical space assessment
  • Hit identification strategy
  • Lead optimization roadmap
  • ADMET & developability assessment

Tools & Platforms Used

  • UniProt
  • PDB
  • AlphaFold DB
  • BLAST
  • Pfam
  • InterPro
  • CDD
  • SWISS-MODEL
  • SiteMap
  • DoGSiteScorer
  • FTMap
  • KNIME
  • Pipeline Pilot
  • DataWarrior
  • RDKit
  • Python (Biopython, Pandas)

Deliverables

  • Target Assessment Report
  • Druggability & Binding Site Report
  • Hit Identification Strategy
  • Scaffold & Chemical Space Report
  • Lead Optimization Roadmap
  • ADMET & Developability Report
  • Executive Summary
  • Presentation & Recommendations

Ready to accelerate your research?

Let our structural bioinformatics experts turn your structure into solutions.

Request a Consultation & Quote →
Functional Exploration

Functional Exploration Solutions.
From Data to Discovery.

We deliver end-to-end bioinformatics services to uncover gene function, regulatory mechanisms, molecular interactions, and biological pathways—transforming complex data into actionable insights.

Our Functional Genomics Pipeline Select the area that aligns with your research goals.
01

Module 01: Gene Expression Profiling

Integrated computational approaches to analyze gene expression patterns, identify differentially expressed genes, and uncover biologically meaningful molecular signatures across conditions.

What We Analyse

  • Bulk RNA-Seq
  • mRNA-Seq
  • Total RNA-Seq
  • Microarray Data
  • Gene-Level Expression
  • Transcript-Level Expression

Key Analysis Areas

  • Quality Control & Pre-processing
  • Expression Quantification
  • Normalization
  • Differential Expression Analysis
  • PCA & Sample Clustering
  • Batch Effect Assessment
  • Co-expression Analysis
  • Functional & Pathway Enrichment
  • Gene Signature & Biomarker Analysis

Tools & Platforms Used

  • FastQC
  • Trimmomatic
  • STAR / HISAT2
  • featureCounts
  • DESeq2
  • edgeR
  • limma
  • ClusterProfiler
  • GSEA
  • R / Bioconductor
  • Python

Deliverables

  • Quality Control Reports
  • Normalized Expression Matrices
  • Differentially Expressed Gene Tables
  • Statistical Analysis Results
  • PCA & Clustering Plots
  • Heatmaps & Volcano Plots
  • Enrichment & Pathway Analysis Results
  • Gene Signature / Biomarker Results
  • Publication-Ready Visualizations
  • Comprehensive Analysis Report

Ready to accelerate your research?

Let our functional genomics experts turn complex biological data into actionable insights.

Request a Consultation & Quote →
Molecular Graphics & Illustration

Molecular Visualization Solutions.
From Data to Discovery.

We deliver end-to-end visualization and illustration services to communicate complex scientific data with clarity—ranging from molecular structures and interactions to genomic data and multi-omics visualizations.

Our Graphics & Illustrations Pipeline Select the area that aligns with your research goals.
01

Module 01: Structural & Molecular Visualisation

Communicate molecular structures, interactions and dynamics with clarity and impact.

What We Do

  • 3D molecular structure rendering
  • Protein–ligand & complex visualization
  • Conformational & dynamic snapshots
  • Surface, ribbon, cartoon & schematic views
  • High-quality figure preparation
  • Figure optimization for publications

Key Analysis Areas

  • Protein structure visualization
  • Molecular interactions & binding sites
  • Conformational changes & dynamics
  • Structural comparisons
  • Active sites & functional regions
  • Membranes & macromolecular assemblies

Tools & Platforms Used

  • PyMOL
  • UCSF Chimera / ChimeraX
  • VMD
  • Discovery Studio Visualizer
  • AutoDock Vina
  • PLIP
  • BIOVIA Discovery Studio
  • Mol* (Molstar)
  • AlphaFold DB
  • SWISS-MODEL Viewer
  • DockThor / HADDOCK
  • LigPlot+ / PoseView

Deliverables

  • Publication-ready figures
  • High-resolution images
  • Vector & raster formats
  • Multiple views & layouts
  • Source files (optional)
  • Quick turnaround support

Transform complexity into clarity.

We turn complex molecular and genomic data into accurate, impactful visuals that drive understanding and accelerate scientific discovery.

Request a Consultation & Quote →

How we execute your request

Our Execution Workflow

A transparent, step-by-step process that ensures clarity, quality and timely delivery from the moment you submit a request to the final results.

  1. 01

    Review the Request

    We carefully review your request to fully understand the scope, objectives, and initial requirements.

  2. 02

    Requirement Meeting

    We schedule a meeting with our expert team to discuss your needs in detail and gather all necessary information.

  3. 03

    Solution Strategy

    Based on the requirements, we define the approach, prepare modules, timelines and share a detailed quote.

  4. 04

    Client Approval

    Once the strategy and quote is confirmed, we initiate the project and allocate dedicated resources.

  5. 05

    Go-live on Project

    We keep you involved with regular updates, review meetings and feedback at every key stage.

  6. 06

    Output and Delivery

    We deliver complete results along with documentation and provide post-service consultation and support.

  • Secure & Confidential

    Your data and information are protected with the highest security standards.

  • Expert Team

    Work with experienced bioinformatics experts specialized in your domain.

  • Tailored Solutions

    We design customized strategies and solutions that align with your research goals.

  • On-time Delivery

    We value your time and ensure timely delivery without compromising on quality.

  • Post-Service Support

    We provide ongoing support and expert consultation whenever you need it.

  • Quality Assured

    All deliverables go through rigorous checks to ensure accuracy and reliability.

Our Happy Learners & Clients

"The internship gave me practical exposure to bioinformatics tools and workflows, helping me understand real-world computational biology projects. Mentors were supportive and explained concepts clearly, especially helpful for beginners from biotech and life science backgrounds."

SN

Sweta Nayak

Research Scholar, Delhi University

"The internship gave me practical exposure to bioinformatics tools and workflows, helping me understand real-world computational biology projects. Mentors were supportive and explained concepts clearly, especially helpful for beginners from biotech and life science backgrounds."

SN

Sweta Nayak

Research Scholar, Delhi University

"The internship gave me practical exposure to bioinformatics tools and workflows, helping me understand real-world computational biology projects. Mentors were supportive and explained concepts clearly, especially helpful for beginners from biotech and life science backgrounds."

SN

Sweta Nayak

Research Scholar, Delhi University

JOIN AS AN EXPERT / CONSULTANT / FREELANCER

Your Expertise.
Real Impact. Global Reach.

Join NyBerMan as an Expert, Consultant or Freelancer and collaborate on impactful projects, deliver innovative solutions and advance the frontiers of bioinformatics.

WHAT YOU CAN DO:
Offer Technical Expertise
Work on Real-world
Bioinformatics Projects
Provide Consulting
& Strategic Guidance
Analyze Complex Data
& Deliver Insights
Develop Tools, Pipelines
& Solutions
Collaborate with
Researchers & Teams
Support Data-driven
Decision Making
Contribute to Innovation
& Knowledge Growth
Work Flexibly
from Anywhere
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